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Division of Molecular Biotherapy [Y. I., M. N., K. K., S. T., E. I., Y. S.] and Division of Experimental Chemotherapy [T. T.], Cancer Chemotherapy Center, and Department of Molecular Diagnosis [Y. M.], Cancer Institute, Japanese Foundation for Cancer Research, Tokyo 170-8455, and Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo 113-0032 [T. T.], Japan
| Abstract |
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315-6)] were identified. G34A and C421A variants were polymorphisms, and 944949 deletion was a splicing variant. C421A BCRP-transfected PA317 cells showed markedly decreased protein expression and low-level drug resistance compared with wild-type BCRP-transfected cells when transfectants expressed similar levels of BCRP mRNA. G34A or 944949-deleted BCRP-transfected PA317 cells showed similar or somewhat lower protein expression and drug resistance compared with wild-type BCRP-transfected cells. Of 124 healthy Japanese volunteers, 67 were wild-type, 48 were heterozygous, and 9 were homozygous for the C421A allele. These results suggest that some people possess the C421A polymorphic BCRP gene and express low amounts of Q141K BCRP. In addition to that, C376T polymorphism in exon 4 substituting stop codon for Gln-126 was found in 3 of the 124 general Japanese population. This C376T polymorphism may also have high impact because active BCRP protein will not be expressed from the C376T allele. Therefore, people with C376T and/or C421A polymorphisms may express low amounts of BCRP, and this low BCRP expression might result in hypersensitivity of normal cells to such anticancer drugs as irinotecan and mitoxantrone. | Introduction |
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Identification of single nucleotide polymorphisms has become important work because single nucleotide polymorphisms in various genes might not only be simple genomic markers but may also have certain significance in the expression and/or function of their product proteins. For example, C3435T polymorphism in exon 26 of the MDR1 gene was shown to be closely associated with low expression levels of P-glycoprotein and high plasma digoxin levels (10).
This study aimed to investigate whether variation of the first structure of the BCRP gene present in nondrug-treated cell lines and a normal population might influence the expression and function of the protein. First, we screened BCRP expression in a panel of 59 cancer cell lines in the anticancer drug screening program of the NCI (Bethesda, MD). Next, the whole coding sequence of BCRP cDNA was determined in 11 cell lines, 5 of which highly expressed BCRP protein. We identified three variant BCRP cDNAs, G34A, C421A, and 944949 deletion, and investigated functional outcomes. Incidences of G34A and C421A polymorphisms were examined in healthy Japanese volunteers. We report that C421A polymorphism is very frequent in the general Japanese population and may be associated with decreased protein expression and low-level drug resistance.
| Materials and Methods |
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Western Blot Analysis.
Frozen cell pellets of 59 cell lines in the NCI anticancer drug screening were obtained from the NCI (11). Cell pellets for MDA-N in the 60 cell line panel were not available. Western blot analysis of BCRP was performed as described previously (12). Briefly, cell pellets were solubilized in a lysis buffer [10 mM Tris-HCl (pH 8.0), 0.1% Triton X-100, 10 mM MgSO4, 2 mM CaCl2, 1 mM 4-(2-aminoethyl)-benzenesulfonylfluoride with or without 1 mM DTT]. Cell lysate was solubilized with 2% SDS, 50 mM Tris-HCl (pH 7.5), in the presence or absence of 5% 2-mercaptoethanol, and resolved by SDS-PAGE. After electrophoresis, proteins were transferred onto nitrocellulose membranes and incubated with an anti-BCRP polyclonal antibody (12). Then, the blots were incubated with a peroxidase-conjugated donkey antirabbit secondary antibody (Amersham Pharmacia Biotech, Buckinghamshire, United Kingdom), and membrane-bound peroxidase was visualized using ECL Plus chemiluminescence detection kit (Amersham).
Sequence Analysis of the BCRP Gene.
The entire coding region of BCRP cDNA was generated by RT-PCR from total RNA by using RNA LA PCR kit (Takara, Kyoto, Japan) according to the manufacturers instructions. The primer set used was 5'-CGGATCCTCCTGAGATCCTGAGCCTTTGGTT-3' and 5'-CGCTCTAGAGATGGCAAGGGAACAGAAAACAACA-3'. PCR products were inserted into pCR2.1 TA cloning vector (Invitrogen, Carlsbad, CA), and three to eight clones were sequenced with ABI Prism377 automatic sequencer (Applied Biosystems, Foster City, CA). Mutations observed in more than two clones were subjected to analysis of other clones derived from an independent RT-PCR product to exclude PCR-induced mutation.
Next, the exon-intron structure of the BCRP gene was determined by aligning the complete ABCP cDNA coding sequence (GenBank accession no. AF103796) and Homo sapiens BAC clone RP11-368G2 from 4 (GenBank accession no. AC084732). The genomic structure of the BCRP gene that we determined was the same as reported in the literature (13). Exon 2 that covers the 34th nucleotide of BCRP cDNA was amplified by PCR with the primer set 5'-GCAATCTCATTTATCTGGACTA-3' and 5'-TGTGAGGTTCACTGTAGGTAAA-3'. Exon 5 that covers the 421st nucleotide of BCRP cDNA was amplified by PCR with the primer set 5'-CCTTAGTTATGTTATCTTTGTG-3' and 5'-GAAACTTCTGAATCAGAGTCAT-3'. Exon 9 that includes the 944949th nucleotides at the 5'-end was amplified with the primer set 5'-TTAGGGAAGCATCCAAGAAAG-3' and 5'-GAAGCAGATGATAACAGAACC-3'. PCR products were either sequenced after TA subcloning or directly sequenced as described.
Establishment of Mutant BCRP-expressing Cells.
G34A, C421A, and 944949-deleted BCRP cDNAs without any other mutations were inserted into a pHaL-IRES-DHFR bicistronic retrovirus vector plasmid. PA317 cells were transfected with those vectors by using a Mammalian Transfection kit (Stratagene, La Jolla, CA) and selected by exposure to 120 ng/ml methotrexate. Hundreds of drug-resistant colonies were pooled and used as BCRP-transfected cells. PA317 cells transfected with wild-type, G34A, C421A, and 944949-deleted BCRP cDNAs were designated PA/WT, PA/V12M, PA/Q141K, and PA/
315-6 cells, respectively.
Northern Blot Analysis.
Twenty µg of total RNA was fractionated on a 1% agarose-formaldehyde gel and transferred to Hybond-N+ (Amersham). The blot was hybridized with a 456-bp fragment from 574th to 1029th nucleotides of BCRP cDNA by using AlkPhos Direct Labeling kit according to the manufacturers instructions (Amersham). Chemiluminescence signal generation and detection were performed with CDP-Star detection reagent according to the manufacturers instructions (Amersham).
Growth Inhibition Assay.
The sensitivity of cells to SN-38, mitoxantrone, and topotecan was evaluated by measuring cell growth inhibition after incubation of cells at 37°C for 5 days in the absence or presence of various concentrations of anticancer agents. Cell numbers were determined with a Coulter counter. IC50s (drug dose causing 50% inhibition of cell growth) were determined from growth inhibition curves, and the degrees of resistance were calculated by dividing IC50s of BCRP-transfected cells by those of parental PA317 cells.
Measurement of Intracellular Topotecan Uptake.
The effect of mutant BCRP on cellular accumulation of topotecan was determined by flow cytometry. Cells (5 x 105) were incubated with 30 µM topotecan for 30 min at 37°C, washed in ice-cold PBS, and subjected to fluorescence analysis using FACSCalibur (Becton-Dickinson, San Jose, CA).
| Results |
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Western and Northern Blot Analyses of Mutant BCRP-expressing Cells.
Western blotting of mutant BCRP-transfected PA317 cells demonstrated markedly low expression of Q141K BCRP in PA/Q141K cells compared with other BCRP-transfected cells. PA/WT, PA/V12M, and PA/
315-6 cells showed similar BCRP expression (Fig. 3A). The results were confirmed by a second, independent transfection experiment of PA317 cells. BCRP expression levels in the transfected cell lines were stable for 4 months without any drug selection. In contrast, Northern blotting demonstrated similar levels of BCRP mRNA in PA/WT, PA/V12M, PA/Q141K, and PA/
315-6 cells (Fig. 3B). These results suggest that Q141K BCRP is unstable when expressed in mammalian cells.
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3156 cells were marginally more sensitive to the drugs than PA/WT cells (Table 2; Fig. 4B). In contrast, PA/Q141K cells showed a 12-fold greater resistance to SN-38 and a 4-fold greater resistance to mitoxantrone (Table 2; Fig. 4A). This means that PA/Q141K cells are 23 times more sensitive to these drugs compared with PA/WT cells. These results support the low expression of BCRP in PA/Q141K cells. Cross-resistance patterns of the transfectants were similar, suggesting that these polymorphisms/deletions did not affect substrate recognition of BCRP.
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315-6 cells (Fig. 5). Increases of mean fluorescence channel number in PA/WT, PA/V12M, and PA/
315-6 cells were 1.5-, 1.6-, and 1.5-fold in the presence of topotecan, respectively. There was a stronger peak shift to the right in PA/Q141K cells than PA/WT cells, showing that topotecan uptake in PA/Q141K cells was higher than that in PA/WT cells, and the increase of mean fluorescence channel number in PA/Q141K cells was 2.1-fold in the presence of topotecan (Fig. 5). This suggests that the topotecan efflux activity of exogenous BCRP is low in PA/Q141K cells.
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| Discussion |
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In this study, we identified three BCRP cDNA variants. G34A and C421A are polymorphisms because they were observed with high frequencies in the general Japanese population. Nucleotides 944949 followed the splicing acceptor site of exon 9, and genomic analysis did not reveal such deletion mutations. Therefore, the deletion of nucleotides 944949 was considered to be a splicing variant between exons 8 and 9. This splicing variant mRNA is also expressed in normal individuals because the deleted cDNA has been also isolated from commercially available human placental cDNA (Marathone-ready cDNA; Clontech, data not shown).
PA/Q141K cells were significantly more sensitive to anticancer agents than the other BCRP transfectants. Intracellular topotecan accumulation of PA/Q141K was higher than that in the other BCRP transfectants. By Western blotting, BCRP expression in PA/Q141K cells was markedly lower than that in the other BCRP transfectants. Another transfection experiment of mutant BCRP cDNAs in KB-3-1 human epidermoid carcinoma cells also revealed markedly lower expression of Q141K BCRP compared with wild-type and V12M BCRP (data not shown). Although the 141st amino acid of BCRP is located in the functionally important ATP-binding region between Walker A and B, increased sensitivity to anticancer drugs was not because of functional alteration but because of decreased protein expression. In the transfection experiment, the expression of C421A BCRP mRNA was identical to those of mRNAs from wild-type, G34A, and 944949-deleted BCRP by Northern blotting. Therefore, the increased sensitivity was considered to be a result of instability of Q141K BCRP. Because lysine and glutamine have different electronic charges, substitution of lysine for glutamine might alter the tertiary structure of BCRP protein, leading to greater susceptibility to degradation.
We first intended to correlate mutant cDNA with protein expression levels of cancer cell lines, but three variants were observed in either cell lines that highly expressed BCRP or those that did not express BCRP. For instance, BCRP was highly expressed in A549 cells that carry both the C421A and wild-type BCRP alleles. Protein expression levels can be influenced not only by mRNA sequences but also by genomic structures such as chromatin alterations, methylation, or acetylation. Increased BCRP expression in A549 cells could be explained by the high transcription rate of the wild-type BCRP gene.
In this study, we showed that 46% of a normal Japanese population carries the C421A allele and, in particular, 7% were homozygous. In the analysis of 59 tumor cell lines, 5 (8%) were heterozygous and 2 (3%) were homozygous for the C421A allele. Because most of these cell lines were established in Western countries, people with the C421A allele should exist at high frequency in Western countries as well. BCRP transports anticancer agents such as SN-38 and mitoxantrone. Irinotecan, a prodrug of SN-38, and mitoxantrone are used in practical chemotherapy for a wide variety of cancers. BCRP expressed in normal tissues of cancer patients may serve to reduce adverse effects of these drugs such as hematological toxicity and digestive tract disorders. Irinotecan in clinically administered dosages causes grade 34 leukopenia in
30% and grade 34 diarrhea in 20% of cancer patients according to the World Health Organization criteria (15, 16). These severe toxicities are presently unpredictable. Because BCRP is expressed in both hematopoietic stem cells and enterocytes of the digestive tract and may protect those cells against toxic compounds, administration of the drugs to patients with the C421A allele may cause severe side effects. We started additional studies to investigate the association of C421A polymorphism with side effects from irinotecan chemotherapy.
In our subsequent genomic DNA analysis, C376T polymorphism in exon 4 substituting stop codon for Gln-126 was found in 3 (2.4%) of the 124 general Japanese population. The 3 were all heterozygous for the C376T allele. This C376T polymorphism may have higher impact than C421A polymorphism because active BCRP protein will not be expressed from the C376T allele. Additional investigation is planned concerning mRNA expression of this C376T allele and possible implication of the C376T polymorphism in side effect of irinotecan.
In summary, C421A BCRP cDNA was associated with low protein expression and subsequent sensitivity to anticancer drugs compared with wild type. C421A polymorphism showed high frequency in the general Japanese population. Screening for C421A polymorphism in cancer patients before chemotherapy should be useful for the prevention of serious side effects of some anticancer drugs.
| Footnotes |
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2 To whom requests for reprints should be addressed, at Division of Molecular Biotherapy, Cancer Chemotherapy Center, Japanese Foundation for Cancer Research, 1-37-1 Kami-Ikebukuro, Toshima-ku, Tokyo 170-8455, Japan. Fax: 81-3-3918-3716; E-mail: ysugimot{at}jfcr.or.jp. ![]()
3 The abbreviations used are: ABC, ATP-binding cassette; BCRP, breast cancer resistance protein; NCI, National Cancer Institute; RT-PCR, reverse transcription-PCR. ![]()
Received 2/13/02; revised 4/ 5/02; accepted 4/11/02.
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